lhallee commited on
Commit
8471a6f
·
verified ·
1 Parent(s): 35b437a

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +13 -3
README.md CHANGED
@@ -25,7 +25,17 @@ configs:
25
  - split: test
26
  path: data/test-*
27
  ---
 
28
 
29
- [OMG_prot50](https://huggingface.co/datasets/tattabio/OMG_prot50) without the IDs to save space. We add validation sets and test sets for evalution purposes, including [ESM2 speed runs](https://github.com/Synthyra/SpeedRunningESM2).
30
- OMG prot50 was clusterd at 50% identity, so random splits are nonredundant to the training set by default. Random splits of 10,000 make up the base components of the validation and test sets.
31
- To the test set, we also add all new uniprot entries since OMG creation that have trasncript level evidence after dedpulication.
 
 
 
 
 
 
 
 
 
 
25
  - split: test
26
  path: data/test-*
27
  ---
28
+ ## OMGProt50 with evaluation splits
29
 
30
+ Thanks [Tatta Bio](https://huggingface.co/tattabio) for putting together such an amazing dataset!
31
+
32
+ To create this version we removed IDs to save space and added the evaluations sets.
33
+
34
+ See [here](https://huggingface.co/datasets/Synthyra/omg_prot50_packed) for a pretokenized version
35
+
36
+ We add validation and test sets for evalution purposes, including [ESM2 speed runs](https://github.com/Synthyra/SpeedRunningESM2).
37
+ OMG prot50 was clusterd at 50% identity, so random splits are nonredundant to the training set by default.
38
+ Random splits of 10,000 make up the base components of the validation and test sets.
39
+ To the test set, we also add all new Uniprot entries since OMG creation that have transcript level evidence after dedpulication.
40
+
41
+ [Code](https://github.com/Synthyra/SpeedRunningESM2/blob/master/data/create_omgprot50_splits.py)